Packages with Software Mentions in Scientific Papers

pypi: scikit-surgeryimage

scikit-surgeryimage implements image processing tools and alogrithms for Image Guided Surgery.
Papers that mentioned: 1

Very Likely Science (100)

pypi: coltron

Package for generating and analyzing transcription networks
Papers that mentioned: 1

Very Likely Science (100)

cran: cjoint

AMCE Estimator for Conjoint Experiments
Papers that mentioned: 1

Very Likely Science (93)

pypi: mpq

Python bindings for StormLib
Papers that mentioned: 1

Very Likely Science (65)

pypi: hmac

HMAC (Keyed-Hashing for Message Authentication) Python module.
Papers that mentioned: 1

Very Likely Science (65)

pypi: gmqtt

Client for MQTT protocol
Papers that mentioned: 1

Very Likely Science (65)

cran: SPEDInstabR

Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept
Papers that mentioned: 1

Very Likely Science (75)

cran: bwimage

Describe Image Patterns in Natural Structures
Papers that mentioned: 1

Very Likely Science (75)

cran: rvHPDT

Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: randPack

Randomization routines for Clinical Trials
Papers that mentioned: 1

Very Likely Science (100)

cran: PoolTestR

Prevalence and Regression for Pool-Tested (Group-Tested) Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: cplot

Plot complex-valued functions
Papers that mentioned: 1

Very Likely Science (100)

pypi: inter

Toolset for interactive command-line applications
Papers that mentioned: 1

Very Likely Science (65)

pypi: goroutine

Use greenlets as coroutines in asyncio
Papers that mentioned: 1

Very Likely Science (65)

pypi: HireFire

A Python lib to integrate with the HireFire service -- The Heroku Proccess Manager
Papers that mentioned: 1

Very Likely Science (65)

pypi: mps

Search, Stream and Download MP3
Papers that mentioned: 1

Likely Science (40)

pypi: Passbook

Passbook file generator
Papers that mentioned: 1

Very Likely Science (65)

pypi: colour

converts and manipulates various color representation (HSL, RVB, web, X11, ...)
Papers that mentioned: 1

Very Likely Science (100)

pypi: iget

A small CLI
Papers that mentioned: 1

Very Likely Science (65)

pypi: hippie

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: RaggedExperiment

Representation of Sparse Experiments and Assays Across Samples
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: TTMap

Two-Tier Mapper: a clustering tool based on topological data analysis
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome Sequencer System
Papers that mentioned: 1

Very Likely Science (90)

pypi: mpt

Microstructure Protocol Toolbox
Papers that mentioned: 1

Very Likely Science (80)

cran: dice

Calculate probabilities of various dice-rolling events
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: diffUTR

diffUTR: Streamlining differential exon and 3' UTR usage
Papers that mentioned: 1

Very Likely Science (100)

cran: lpbrim

LP-BRIM Bipartite Modularity
Papers that mentioned: 1

Very Likely Science (75)

pypi: conversion

Utility functions to convert strings to Python types
Papers that mentioned: 1

Likely Science (40)

pypi: MoCV

List and details of Computer Vision algorithms
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: RadioGx

Analysis of Large-Scale Radio-Genomic Data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: dpeak

dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: R3CPET

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Papers that mentioned: 1

Very Likely Science (100)

cran: dotCall64

Enhanced Foreign Function Interface Supporting Long Vectors
Papers that mentioned: 1

Very Likely Science (75)

cran: DoTC

Distribution of Typicality Coefficients
Papers that mentioned: 1

Very Likely Science (75)

cran: CodataGS

Genomic Prediction Using SNP Codata
Papers that mentioned: 1

Very Likely Science (75)

pypi: coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
Papers that mentioned: 1

Very Likely Science (100)

cran: LPWC

Lag Penalized Weighted Correlation for Time Series Clustering
Papers that mentioned: 1

Very Likely Science (100)

cran: spectrolab

Class and Methods for Spectral Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: instr

Simple wrapper for various SCPI-compliant instruments
Papers that mentioned: 1

Very Likely Science (65)

pypi: scanphyslog2bids

scanphyslog2bids: converts Philips physiology files to the BIDS-format
Papers that mentioned: 1

Very Likely Science (100)

cran: bridger

Bridge Hand Generator with Criteria Selector
Papers that mentioned: 1

Very Likely Science (75)

pypi: scikit-surgerynditracker

Interface for Northern Digital (NDI) Trackers with data to NumPy arrays
Papers that mentioned: 1

Very Likely Science (100)

pypi: moiety-modeling

Moiety Modeling Implementation
Papers that mentioned: 1

Very Likely Science (100)

cran: CoFRA

Complete Functional Regulation Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: infotheory

Information theoretic analysis tools
Papers that mentioned: 1

Very Likely Science (75)

cran: dineq

Decomposition of (Income) Inequality
Papers that mentioned: 1

Very Likely Science (75)

cran: doremi

Dynamics of Return to Equilibrium During Multiple Inputs
Papers that mentioned: 1

Very Likely Science (75)

pypi: mrbles

MRBLEs decoding and analysis package
Papers that mentioned: 1

Very Likely Science (100)

cran: corpora

Statistics and Data Sets for Corpus Frequency Data
Papers that mentioned: 1

Very Likely Science (85)

cran: coder

Deterministic Categorization of Items Based on External Code Data
Papers that mentioned: 1

Very Likely Science (75)

cran: bruceR

Broadly Useful Convenient and Efficient R Functions
Papers that mentioned: 1

Very Likely Science (100)

cran: ggpointdensity

A Cross Between a 2D Density Plot and a Scatter Plot
Papers that mentioned: 1

Very Likely Science (97)

pypi: mofa

Mixture of factor analyzers
Papers that mentioned: 1

Very Likely Science (100)

cran: BRDT

Binomial Reliability Demonstration Tests
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: eisaR

Exon-Intron Split Analysis (EISA) in R
Papers that mentioned: 1

Very Likely Science (100)

cran: donut

Nearest Neighbour Search with Variables on a Torus
Papers that mentioned: 1

Very Likely Science (100)

pypi: cpplint

Automated checker to ensure C++ files follow Google's style guide
Papers that mentioned: 1

Very Likely Science (100)

pypi: saxpy

SAX, HOTSAX, EMMA implementations for Python
Papers that mentioned: 1

Very Likely Science (71)

cran: spcr

Sparse Principal Component Regression
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: ODER

Optimising the Definition of Expressed Regions
Papers that mentioned: 1

Very Likely Science (100)

cran: bpnreg

Bayesian Projected Normal Regression Models for Circular Data
Papers that mentioned: 1

Very Likely Science (89)

pypi: industry

first dist
Papers that mentioned: 1

Very Likely Science (65)

pypi: colorspacious

A powerful, accurate, and easy-to-use Python library for doing colorspace conversions
Papers that mentioned: 1

Very Likely Science (100)

pypi: gmr

Gaussian Mixture Regression
Papers that mentioned: 1

Very Likely Science (100)

pypi: hext

A module and command-line utility to extract structured data from HTML
Papers that mentioned: 1

Likely Science (40)

cran: SIMMS

Subnetwork Integration for Multi-Modal Signatures
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: epiNEM

epiNEM
Papers that mentioned: 1

Very Likely Science (100)

cran: sets

Sets, Generalized Sets, Customizable Sets and Intervals
Papers that mentioned: 1

Very Likely Science (75)

cran: triangulation

Determine Position of Observer
Papers that mentioned: 1

Very Likely Science (75)

pypi: impyute

Cross-sectional and time-series data imputation algorithms
Papers that mentioned: 1

Very Likely Science (90)

cran: simode

Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching
Papers that mentioned: 1

Very Likely Science (85)

cran: biocompute

Create and Manipulate BioCompute Objects
Papers that mentioned: 1

Very Likely Science (81)

cran: boxplotdbl

Double Box Plot for Two-Axes Correlation
Papers that mentioned: 1

Very Likely Science (85)

cran: xbreed

Genomic Simulation of Purebred and Crossbred Populations
Papers that mentioned: 1

Very Likely Science (85)

cran: wtest

The W-Test for Genetic Interactions Testing
Papers that mentioned: 1

Very Likely Science (85)

pypi: coa

Cuckoo Optimization Algorithm in Python
Papers that mentioned: 1

Very Likely Science (75)

cran: complmrob

Robust Linear Regression with Compositional Data as Covariates
Papers that mentioned: 1

Very Likely Science (89)

cran: plinkQC

Genotype Quality Control with 'PLINK'
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: FastqCleaner

A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: fCCAC

functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: fcScan

fcScan for detecting clusters of coordinates with user defined options
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: widgetTools

Creates an interactive tcltk widget
Papers that mentioned: 1

Very Likely Science (83)

cran: CompRandFld

Composite-Likelihood Based Analysis of Random Fields
Papers that mentioned: 1

Very Likely Science (85)

cran: listdtr

List-Based Rules for Dynamic Treatment Regimes
Papers that mentioned: 1

Very Likely Science (75)

cran: ggquickeda

Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary Tables
Papers that mentioned: 1

Very Likely Science (89)

cran: colorizer

Colorize Old Images Using the 'DeOldify' Image Colorization API
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: yamss

Tools for high-throughput metabolomics
Papers that mentioned: 1

Very Likely Science (100)

cran: DNMF

Discriminant Non-Negative Matrix Factorization
Papers that mentioned: 1

Very Likely Science (100)

cran: collin

Visualization the Effects of Collinearity in Distributed Lag Models and Other Linear Models
Papers that mentioned: 1

Very Likely Science (85)

cran: conos

Clustering on Network of Samples
Papers that mentioned: 1

Very Likely Science (100)

cran: sever

Customise 'Shiny' Disconnected Screens and Error Messages
Papers that mentioned: 1

Very Likely Science (75)

pypi: scikit-surgeryspeech

Interface to speech services for image-guided surgery.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: fastLiquidAssociation

functions for genome-wide application of Liquid Association
Papers that mentioned: 1

Very Likely Science (90)

cran: ggResidpanel

Panels and Interactive Versions of Diagnostic Plots using 'ggplot2'
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: fishpond

Fishpond: downstream methods and tools for expression data
Papers that mentioned: 1

Very Likely Science (100)

cran: collUtils

Auxiliary Package for Package 'CollapsABEL'
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: FilterFFPE

FFPE Artificial Chimeric Read Filter for NGS data
Papers that mentioned: 1

Very Likely Science (90)

cran: dmutate

Mutate Data Frames with Random Variates
Papers that mentioned: 1

Very Likely Science (81)

bioconductor: flowcatchR

Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Papers that mentioned: 1

Very Likely Science (82)

cran: SIHR

Statistical Inference in High Dimensional Regression
Papers that mentioned: 1

Very Likely Science (68)