Packages with Software Mentions in Scientific Papers

pypi: Fluence

Pytorch based deep learning library focussed on providing computationally efficient low resource methods and algorithms for NLP
Papers that mentioned: 1

Very Likely Science (100)

cran: cmaes

Covariance Matrix Adapting Evolutionary Strategy
Papers that mentioned: 1

Very Likely Science (85)

cran: CoClust

Copula Based Cluster Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: colorfulVennPlot

Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
Papers that mentioned: 1

Very Likely Science (75)

cran: complexity

Calculate the Proportion of Permutations in Line with an Informative Hypothesis
Papers that mentioned: 1

Very Likely Science (75)

cran: COMPoissonReg

Conway-Maxwell Poisson (COM-Poisson) Regression
Papers that mentioned: 1

Very Likely Science (100)

cran: mdthemes

Markdown Themes for 'ggplot2'
Papers that mentioned: 1

Very Likely Science (75)

pypi: jpeglib

Python envelope for the popular C librarylibjpeg for handling JPEG files.
Papers that mentioned: 1

Very Likely Science (100)

cran: ConSpline

Partial Linear Least-Squares Regression using Constrained Splines
Papers that mentioned: 1

Very Likely Science (93)

cran: contact

Creating Contact and Social Networks
Papers that mentioned: 1

Very Likely Science (100)

cran: nevada

Network-Valued Data Analysis
Papers that mentioned: 1

Very Likely Science (93)

cran: SemNeT

Methods and Measures for Semantic Network Analysis
Papers that mentioned: 1

Very Likely Science (95)

pypi: squire

Watch a directory and run a command on changes
Papers that mentioned: 1

Very Likely Science (65)

cran: conting

Bayesian Analysis of Contingency Tables
Papers that mentioned: 1

Very Likely Science (85)

cran: Copula.surv

Analysis of Bivariate Survival Data Based on Copulas
Papers that mentioned: 1

Very Likely Science (85)

cran: nichevol

Tools for Ecological Niche Evolution Assessment Considering Uncertainty
Papers that mentioned: 1

Very Likely Science (95)

pypi: mcx

Express & compile probabilistic programs for performant inference on CPU & GPU. Powered by JAX.
Papers that mentioned: 1

Very Likely Science (65)

cran: nimbleEcology

Distributions for Ecological Models in 'nimble'
Papers that mentioned: 1

Very Likely Science (100)

cran: countcolors

Locates and Counts Pixels Within Color Range(s) in Images
Papers that mentioned: 1

Very Likely Science (75)

cran: COUSCOus

A Residue-Residue Contact Detecting Method
Papers that mentioned: 1

Very Likely Science (75)

pypi: BatchTINTV3

BatchTINTV3 - GUI created to more efficiently sort Axona/Tint data.
Papers that mentioned: 1

Very Likely Science (85)

pypi: flyr

Flyr is a library for extracting thermal data from FLIR images written fully in Python, without depending on ExifTool.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pmeta

Python for Meta Analysis
Papers that mentioned: 1

Very Likely Science (75)

cran: CpGFilter

CpG Filtering Method Based on Intra-Class Correlation Coefficients
Papers that mentioned: 1

Very Likely Science (93)

pypi: fmc

fmc is a simple cli application for one's own convenience.
Papers that mentioned: 1

Very Likely Science (65)

pypi: adk

A ADK-dev Kit
Papers that mentioned: 1

Very Likely Science (65)

pypi: baton

Python wrapper for baton.
Papers that mentioned: 1

Very Likely Science (100)

pypi: aenet

Papers that mentioned: 1

Very Likely Science (65)

pypi: aikido

Python library TBA
Papers that mentioned: 1

Very Likely Science (65)

pypi: Aion

Papers that mentioned: 1

Very Likely Science (65)

pypi: AJAS

Lightweight REST Sever framework, based on bottle
Papers that mentioned: 1

Very Likely Science (65)

cran: DACF

Data Analysis with Ceiling and/or Floor Data
Papers that mentioned: 1

Very Likely Science (93)

cran: dataMaid

A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process
Papers that mentioned: 1

Very Likely Science (100)

cran: dataverse

Client for Dataverse 4+ Repositories
Papers that mentioned: 1

Very Likely Science (100)

pypi: Amara

Library for XML processing in Python
Papers that mentioned: 1

Very Likely Science (65)

cran: mlr3proba

Probabilistic Supervised Learning for 'mlr3'
Papers that mentioned: 1

Very Likely Science (75)

cran: dcminfo

Information Matrix for Diagnostic Classification Models
Papers that mentioned: 1

Very Likely Science (75)

cran: mixRasch

Mixture Rasch Models with JMLE
Papers that mentioned: 1

Very Likely Science (75)

pypi: fmrb

Papers that mentioned: 1

Very Likely Science (65)

cran: MixTwice

Large-Scale Hypothesis Testing by Variance Mixing
Papers that mentioned: 1

Very Likely Science (93)

cran: mkde

2D and 3D Movement-Based Kernel Density Estimates (MKDEs)
Papers that mentioned: 1

Very Likely Science (83)

cran: demography

Forecasting Mortality, Fertility, Migration and Population Data
Papers that mentioned: 1

Very Likely Science (100)

cran: desiR

Desirability Functions for Ranking, Selecting, and Integrating Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: pnet

Fast zero-copy packet creating and parsing module
Papers that mentioned: 1

Very Likely Science (65)

pypi: fns

Reusable functions for use in ML projects
Papers that mentioned: 1

Very Likely Science (65)

pypi: pecan

A WSGI object-dispatching web framework, designed to be lean and fast, with few dependencies.
Papers that mentioned: 1

Very Likely Science (65)

cran: Modalclust

Hierarchical Modal Clustering
Papers that mentioned: 1

Very Likely Science (83)

cran: DiffXTables

Pattern Analysis Across Contingency Tables
Papers that mentioned: 1

Very Likely Science (93)

cran: discreteRV

Create and Manipulate Discrete Random Variables
Papers that mentioned: 1

Very Likely Science (100)

cran: discretization

Data Preprocessing, Discretization for Classification
Papers that mentioned: 1

Very Likely Science (75)

cran: discrim

Model Wrappers for Discriminant Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: focal

Data Access Objects for local files
Papers that mentioned: 1

Very Likely Science (65)

cran: MPAgenomics

Multi-Patient Analysis of Genomic Markers
Papers that mentioned: 1

Very Likely Science (85)

cran: dLagM

Time Series Regression Models with Distributed Lag Models
Papers that mentioned: 1

Very Likely Science (93)

cran: MPsychoR

Modern Psychometrics with R
Papers that mentioned: 1

Very Likely Science (83)

cran: DLMtool

Data-Limited Methods Toolkit
Papers that mentioned: 1

Very Likely Science (75)

An extensive library for processing FoLiA documents. FoLiA stands for Format for Linguistic Annotation and is a very rich XML-based format used by various Natural Language Processing tools.
Papers that mentioned: 1

Very Likely Science (100)

cran: mratios

Ratios of Coefficients in the General Linear Model
Papers that mentioned: 1

Likely Science (58)

pypi: bcloud

Baidu Pan client for Linux Desktop users
Papers that mentioned: 1

Very Likely Science (65)

cran: DMTL

Tools for Applying Distribution Mapping Based Transfer Learning
Papers that mentioned: 1

Very Likely Science (79)

cran: dnapath

Differential Network Analysis using Gene Pathways
Papers that mentioned: 1

Very Likely Science (93)

cran: docopulae

Optimal Designs for Copula Models
Papers that mentioned: 1

Very Likely Science (75)

cran: MSCMT

Multivariate Synthetic Control Method Using Time Series
Papers that mentioned: 1

Very Likely Science (93)

cran: MTAR

Multi-Trait Analysis of Rare-Variant Association Study
Papers that mentioned: 1

Very Likely Science (85)

pypi: ent

library for creating arbitrary data structures
Papers that mentioned: 1

Very Likely Science (65)

cran: MSwM

Fitting Markov Switching Models
Papers that mentioned: 1

Very Likely Science (83)

pypi: Anika

this is just a test, please ignore it
Papers that mentioned: 1

Very Likely Science (65)

pypi: Anemone

Monitor long running analyses by remote plotting of selected variables
Papers that mentioned: 1

Very Likely Science (90)

pypi: ao

a minimal example package (pure python version)
Papers that mentioned: 1

Very Likely Science (65)

pypi: aoa

Python client for Teradata AnalyticOps Accelerator (AOA)
Papers that mentioned: 1

Very Likely Science (65)

pypi: any

Command Line Interface for Anyscale
Papers that mentioned: 1

Very Likely Science (65)

cran: multiMarker

Latent Variable Model to Infer Food Intake from Multiple Biomarkers
Papers that mentioned: 1

Very Likely Science (75)

cran: MultiJoin

Enables Efficient Joining of Data File on Common Fields using the Unix Utility Join
Papers that mentioned: 1

Likely Science (50)

cran: drought

Statistical Modeling and Assessment of Drought
Papers that mentioned: 1

Very Likely Science (85)

cran: multiway

Component Models for Multi-Way Data
Papers that mentioned: 1

Very Likely Science (83)

pypi: arcane

Python library for creating dynamic websites.
Papers that mentioned: 1

Likely Science (40)

pypi: foot

Fetches a list of URLs and silly walks through each site to gather information.
Papers that mentioned: 1

Likely Science (40)

pypi: arachnid

Single Particle Data Analysis Suite
Papers that mentioned: 1

Very Likely Science (90)

cran: dyads

Dyadic Network Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: arteria

Helper classes for the arteria project
Papers that mentioned: 1

Very Likely Science (80)

cran: DySeq

Functions for Dyadic Sequence Analyses
Papers that mentioned: 1

Very Likely Science (75)

cran: DysPIA

Dysregulated Pathway Identification Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: muRL

Mailmerge using R, LaTeX, and the Web
Papers that mentioned: 1

Very Likely Science (83)

pypi: bebop

Solr object mapping and schema generation without all the XML
Papers that mentioned: 1

Very Likely Science (65)

pypi: SVision

SV/CSV callers
Papers that mentioned: 1

Very Likely Science (92)

pypi: mdoc

Modular documents
Papers that mentioned: 1

Very Likely Science (65)

cran: EcoTroph

An Implementation of the EcoTroph Ecosystem Modelling Approach
Papers that mentioned: 1

Very Likely Science (85)

pypi: Attic

Deduplicated backups
Papers that mentioned: 1

Likely Science (40)

pypi: audio

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: audiomath

A package for recording, reading, manipulating, playing and writing sound files
Papers that mentioned: 1

Very Likely Science (65)

pypi: bedserver

A fast and simple bedfile server
Papers that mentioned: 1

Very Likely Science (65)

pypi: autogen

Automate development tasks
Papers that mentioned: 1

Very Likely Science (65)

cran: RevGadgets

Visualization and Post-Processing of 'RevBayes' Analyses
Papers that mentioned: 1

Very Likely Science (100)

cran: NB.MClust

Negative Binomial Model-Based Clustering
Papers that mentioned: 1

Very Likely Science (75)

pypi: avantage

Papers that mentioned: 1

Very Likely Science (65)

pypi: mdocspoofer

spoof SerialEM mdoc files from images collected in Tomography v5 from ThermoFisher
Papers that mentioned: 1

Very Likely Science (65)

cran: netSEM

Network Structural Equation Modeling
Papers that mentioned: 1

Very Likely Science (93)

cran: netassoc

Inference of Species Associations from Co-Occurrence Data
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: biobroom

Turn Bioconductor objects into tidy data frames
Papers that mentioned: 1

Very Likely Science (100)

cran: NITPicker

Finds the Best Subset of Points to Sample
Papers that mentioned: 1

Very Likely Science (75)